Category: Employee Posts

MiniLIMS for Ion Torrent PGM Sequencer Launched

MiniLIMS for Ion Torrent PGM Sequencer Launched

BioTeam Inc. announces the availability of BioTeam MiniLIMS for Ion Torrent Personal Genome Machine (PGM).

Metrum moves to the cloud

Metrum moves to the cloud

Over the past few years, many life science organizations have dabbled in cloud computing and explored infrastructure-as-a-service, with varying degrees of enthusiasm and commitment. But one Connecticut company has decided to go for broke—transferring its entire IT infrastructure onto the Amazon cloud.

A PGM Planned Experiment in MiniLIMS

MiniLIMS Ion Torrent plugin sneak peek

The great conflagration of genomic luminaries known as AGBT is once again upon us. Getting it in just under the wire, we’ll be releasing the Ion Torrent plugin for the MiniLIMS platform at this meeting. MiniLIMS Product Page MiniLIMS User Guide System requirements Request a quote If you’ve been following my previous posts about the [...]

JSON returned for an Instrument query

Adding a coating of civilization to PHP stdclass with the PGMObject base class

Previous posts in this series: Ion Torrent Server API, I’d like to introduce you to the MiniLIMS API The MiniLIMS 4 column table and it’s PHP manifestation, the TypeInstance A quick round of applause for the Ion Torrent Server API Bioinformatics has been notorious for the tension between public, supported access to data and algorithms [...]

Inside the Box – Jan 2012

Inside the Box – Jan 2012

The Unstable Equilibrium of the Bioinformatics Org Chart

Building Open Grid Scheduler on CentOS/RHEL 6.2

Building Open Grid Scheduler on CentOS/RHEL 6.2

How to build Grid Engine 2011.11 from source on 64bit CentOS/RHEL 6.x based systems.

Smart Storage

Smart Storage

BioTeam highlights scientific LIMS software running inside a storage array appliance.

CentOS 6.1, local VMs and Opscode Chef

CentOS 6.1, local VMs and Opscode Chef

This blog post is just a quick one-off article to highlight how well Chef plays with non-cloud systems including local virtual machines that BioTeam is running via Citrix XenServer.

Torrent Server JSON document for experiment/3

A quick round of applause for the Ion Torrent Server API

Previous posts in this series: Ion Torrent Server API, I’d like to introduce you to the MiniLIMS API The MiniLIMS 4 column table and it’s PHP manifestation, the TypeInstance I’d like to suggest a quick round of applause for the RESTful Ion Torrent Server API. I feel funny doing so; it’s like applauding a common [...]

Partial feature table from rat KCNA1

The MiniLIMS 4 column table and it’s PHP manifestation, the TypeInstance

Previous posts in this series: Ion Torrent Server API, I’d like to introduce you to the MiniLIMS API Name-value pairs If you’ve done any data modeling or database design in the last few years, particularly in bioinformatics, you’ve probably run across a name-value pair construct. Name-value pairs are often used when you have a variable [...]

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